Handling permutation in sequence comparison: genome-wide enhancer prediction in vertebrates by a novel non-linear alignment scoring principle - Dolle, Dirk-Dominik; Mateo, Juan L.; Eichenlaub, Michael P.; Sinn, Rebecca; Reinhardt, Robert; Höckendorf, Burkhard; Inoue, Daigo; Centanin, Lázaro; Wittbrodt, Joachim (PLOS ONE, 2015)