Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approach
In response to biotic stresses, such as herbivore attack, plants reorganize their transcriptomes and reconfigure their physiologies not only in attacked tissues but throughout the plant. These whole-organismic reconfigurations are coordinated by a poorly understood network of signal transduction cas...
Gespeichert in:
| Hauptverfasser: | , |
|---|---|
| Dokumenttyp: | Article (Journal) |
| Sprache: | Englisch |
| Veröffentlicht: |
May 8, 2013
|
| In: |
Plant physiology
Year: 2013, Jahrgang: 162, Heft: 2, Pages: 1042-1059 |
| ISSN: | 1532-2548 |
| DOI: | 10.1104/pp.113.217588 |
| Online-Zugang: | Verlag, kostenfrei, Volltext: http://dx.doi.org/10.1104/pp.113.217588 Verlag, kostenfrei, Volltext: http://www.plantphysiol.org/content/162/2/1042 
|
| Verfasserangaben: | Jyotasana Gulati, Sang-Gyu Kim, Ian T. Baldwin, and Emmanuel Gaquerel |
MARC
| LEADER | 00000caa a2200000 c 4500 | ||
|---|---|---|---|
| 001 | 1558748806 | ||
| 003 | DE-627 | ||
| 005 | 20220813173923.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 170518s2013 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1104/pp.113.217588 |2 doi | |
| 035 | |a (DE-627)1558748806 | ||
| 035 | |a (DE-576)488748801 | ||
| 035 | |a (DE-599)BSZ488748801 | ||
| 035 | |a (OCoLC)1340975570 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rda | ||
| 041 | |a eng | ||
| 084 | |a 32 |2 sdnb | ||
| 100 | 1 | |a Gulati, Jyotasana |d 1985- |e VerfasserIn |0 (DE-588)1047266288 |0 (DE-627)777940639 |0 (DE-576)400857405 |4 aut | |
| 245 | 1 | 0 | |a Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approach |c Jyotasana Gulati, Sang-Gyu Kim, Ian T. Baldwin, and Emmanuel Gaquerel |
| 264 | 1 | |c May 8, 2013 | |
| 300 | |a 18 | ||
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Gesehen am 17.05.2017 | ||
| 520 | |a In response to biotic stresses, such as herbivore attack, plants reorganize their transcriptomes and reconfigure their physiologies not only in attacked tissues but throughout the plant. These whole-organismic reconfigurations are coordinated by a poorly understood network of signal transduction cascades. To explore tissue-based interdependencies in the resistance of Nicotiana attenuata to insect attack, we conducted time-series transcriptome and metabolome profiling of herbivory-elicited source leaves and unelicited sink leaves and roots. To probe the multidimensionality of these molecular responses, we designed a novel approach of combining an extended self-organizing maps-based dimensionality reduction method with bootstrap-based nonparametric analysis of variance models to identify the onset and context of signaling and metabolic pathway activations. We illustrate the value of this analysis by revisiting dynamic changes in the expression of regulatory and structural genes of the oxylipin pathway and by studying nonlinearities in gene-metabolite associations involved in the acyclic diterpene glucoside pathway after selectively extracting modules based on their dynamic response patterns. This novel dimensionality reduction approach is broadly applicable to capture the dynamic rewiring of gene and metabolite networks in experimental design with multiple factors. | ||
| 700 | 1 | |a Gaquerel, Emmanuel |e VerfasserIn |0 (DE-588)1124181636 |0 (DE-627)877879494 |0 (DE-576)482380500 |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Plant physiology |d Oxford : Oxford University Press, 1926 |g 162(2013), 2, Seite 1042-1059 |h Online-Ressource |w (DE-627)314092579 |w (DE-600)2004346-6 |w (DE-576)090885635 |x 1532-2548 |7 nnas |a Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approach |
| 773 | 1 | 8 | |g volume:162 |g year:2013 |g number:2 |g pages:1042-1059 |g extent:18 |a Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approach |
| 856 | 4 | 0 | |u http://dx.doi.org/10.1104/pp.113.217588 |x Verlag |x Resolving-System |z kostenfrei |3 Volltext |
| 856 | 4 | 0 | |u http://www.plantphysiol.org/content/162/2/1042 |x Verlag |z kostenfrei |3 Volltext |
| 951 | |a AR | ||
| 992 | |a 20170518 | ||
| 993 | |a Article | ||
| 994 | |a 2013 | ||
| 998 | |g 1124181636 |a Gaquerel, Emmanuel |m 1124181636:Gaquerel, Emmanuel |p 4 |y j | ||
| 999 | |a KXP-PPN1558748806 |e 2969650215 | ||
| BIB | |a Y | ||
| SER | |a journal | ||
| JSO | |a {"name":{"displayForm":["Jyotasana Gulati, Sang-Gyu Kim, Ian T. Baldwin, and Emmanuel Gaquerel"]},"id":{"doi":["10.1104/pp.113.217588"],"eki":["1558748806"]},"origin":[{"dateIssuedKey":"2013","dateIssuedDisp":"May 8, 2013"}],"relHost":[{"recId":"314092579","corporate":[{"role":"isb","roleDisplay":"Herausgebendes Organ","display":"American Society of Plant Physiologists"},{"role":"isb","roleDisplay":"Herausgebendes Organ","display":"American Society of Plant Biologists"}],"language":["eng"],"disp":"Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approachPlant physiology","note":["Fortsetzung der Druck-Ausgabe","Gesehen am 09.08.2022","Beteil. Körp. anfangs: American Society of Plant Physiologists"],"type":{"media":"Online-Ressource","bibl":"periodical"},"titleAlt":[{"title":"A journal devoted to all phases of plant physiology"},{"title":"Volume 80, number 1 (January 1986)-volume 122, number 4 (April 2000): An international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants"},{"title":"Volume 123, number 1 (May 2000)-volume 128, number 3 (March 2002): An international journal devoted to development, cellular and molecular biology, biochemistry, biophysics, physiology, environmental biology, molecular evolution, genomics, ecophysiology, and whole plant"},{"title":"Volume 128, number 4 (April 2002)-volume 169, number 2 (October 2015): An international journal devoted to basic research into how plants function, ranging from the molecular to the cellular to the whole plant levels, and including the interactions of plants with their biotic and abiotic environments"}],"part":{"year":"2013","issue":"2","pages":"1042-1059","volume":"162","text":"162(2013), 2, Seite 1042-1059","extent":"18"},"pubHistory":["1.1926 -"],"title":[{"title_sort":"Plant physiology","title":"Plant physiology"}],"physDesc":[{"extent":"Online-Ressource"}],"name":{"displayForm":["publ. monthly by the American Society of Plant Biologists"]},"id":{"zdb":["2004346-6"],"eki":["314092579"],"issn":["1532-2548"]},"origin":[{"dateIssuedDisp":"1926-","dateIssuedKey":"1926","publisher":"Oxford University Press ; Soc.","publisherPlace":"Oxford ; Rockville, Md."}]}],"physDesc":[{"extent":"18 S."}],"person":[{"roleDisplay":"VerfasserIn","display":"Gulati, Jyotasana","role":"aut","family":"Gulati","given":"Jyotasana"},{"role":"aut","roleDisplay":"VerfasserIn","display":"Gaquerel, Emmanuel","given":"Emmanuel","family":"Gaquerel"}],"title":[{"title_sort":"Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approach","title":"Deciphering herbivory-induced gene-to-metabolite dynamics in nicotiana attenuata tissues using a multifactorial approach"}],"recId":"1558748806","language":["eng"],"note":["Gesehen am 17.05.2017"],"type":{"media":"Online-Ressource","bibl":"article-journal"}} | ||
| SRT | |a GULATIJYOTDECIPHERIN8201 | ||