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metaSNV: a tool for metagenomic strain level analysis

We present metaSNV, a tool for single nucleotide variant (SNV) analysis in metagenomic samples, capable of comparing populations of thousands of bacterial and archaeal species. The tool uses as input nucleotide sequence alignments to reference genomes in standard SAM/BAM format, performs SNV calling...

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Bibliographic Details
Main Authors: Costea, Paul Igor (Author) , Sunagawa, Shinichi (Author) , Bork, Peer (Author)
Format: Article (Journal)
Language:English
Published: July 28, 2017
In: PLOS ONE
Year: 2017, Volume: 12, Issue: 7
ISSN:1932-6203
DOI:10.1371/journal.pone.0182392
Online Access:Verlag, Volltext: http://dx.doi.org/10.1371/journal.pone.0182392
Verlag, Volltext: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5533426/
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Author Notes:Paul Igor Costea, Robin Munch, Luis Pedro Coelho, Lucas Paoli, Shinichi Sunagawa, Peer Bork

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