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NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

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Shotgun metagenomes contain a sample of all the genomic material in an environment, allowing for the characterization of a microbial community. In order to understand these communities, bioinformatics methods are crucial. A common first step in processing metagenomes is to compute abundance estimate...

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Main Authors: Coelho, Luis Pedro (Author) , Bork, Peer (Author)
Format: Article (Journal)
Language:English
Published: 03 June 2019
In: Microbiome
Year: 2019, Volume: 7
ISSN:2049-2618
DOI:10.1186/s40168-019-0684-8
Online Access:Verlag, Volltext: https://doi.org/10.1186/s40168-019-0684-8
Verlag, Volltext: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0684-8
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Author Notes:Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas and Peer Bork
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NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language by Coelho, Luis Pedro (Author) , Huerta-Cepas, Jaime (Author) , Freitas, Ana Teresa (Author) , Bork, Peer (Author) ,

BioMed Central 07 Aug. 2019 Universitätsbibliothek Heidelberg 07 Aug. 2019

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