Cover Image

Cytomine: toward an open and collaborative software platform for digital pathology bridged to molecular investigations

Show other versions (1)

Purpose Digital histology is being increasingly used in research and clinical applications. In parallel, new tissue imaging methods (e.g., imaging mass spectrometry) are currently regarded as very promising approaches for better molecular diagnosis in pathology. However, these new data sources are s...

Full description

Saved in:
Bibliographic Details
Main Authors: Rubens, Ulysse (Author) , Longuespée, Rémi (Author)
Format: Article (Journal)
Language:English
Published: 2019
In: Proteomics. Clinical applications
Year: 2018, Volume: 13, Issue: 1
ISSN:1862-8354
DOI:10.1002/prca.201800057
Online Access:Verlag, Volltext: https://doi.org/10.1002/prca.201800057
Verlag: https://onlinelibrary.wiley.com/doi/abs/10.1002/prca.201800057
Get full text
Author Notes:Ulysse Rubens, Renaud Hoyoux, Laurent Vanosmael, Mehdy Ouras, Maxime Tasset, Christopher Hamilton, Rémi Longuespée, and Raphaël Marée

MARC

LEADER 00000caa a2200000 c 4500
001 1679756389
003 DE-627
005 20220817010758.0
007 cr uuu---uuuuu
008 191024r20192018xx |||||o 00| ||eng c
024 7 |a 10.1002/prca.201800057  |2 doi 
035 |a (DE-627)1679756389 
035 |a (DE-599)KXP1679756389 
035 |a (OCoLC)1341210053 
040 |a DE-627  |b ger  |c DE-627  |e rda 
041 |a eng 
084 |a 33  |2 sdnb 
100 1 |a Rubens, Ulysse  |e VerfasserIn  |0 (DE-588)1184424748  |0 (DE-627)1663537178  |4 aut 
245 1 0 |a Cytomine  |b toward an open and collaborative software platform for digital pathology bridged to molecular investigations  |c Ulysse Rubens, Renaud Hoyoux, Laurent Vanosmael, Mehdy Ouras, Maxime Tasset, Christopher Hamilton, Rémi Longuespée, and Raphaël Marée 
264 1 |c 2019 
336 |a Text  |b txt  |2 rdacontent 
337 |a Computermedien  |b c  |2 rdamedia 
338 |a Online-Ressource  |b cr  |2 rdacarrier 
500 |a Published online: December 19, 2018 
500 |a Gesehen am 30.10.2019 
520 |a Purpose Digital histology is being increasingly used in research and clinical applications. In parallel, new tissue imaging methods (e.g., imaging mass spectrometry) are currently regarded as very promising approaches for better molecular diagnosis in pathology. However, these new data sources are still often underexploited because of the lack of collaborative software to share and correlate information for multimodal analysis. Experimental design The open science paradigm is followed to develop new features in the web-based Cytomine software to support next-generation digital pathology bridged to molecular investigations. Results New open-source developments allow to explore whole-slide classical histology with Matrix Assisted Laser Desorption Ionisation (MALDI) imaging and to support preprocessing for biomarker discovery using laser microdissection-based microproteomics. Conclusions and clinical relevance The updated version of Cytomine is the first open and web-based tool to enable sharing data from classical histology, molecular imaging, and cell counting for proteomics preprocessing. It holds good promise to fulfill imminent needs in molecular histopathology. 
534 |c 2018 
700 1 |a Longuespée, Rémi  |e VerfasserIn  |0 (DE-588)113707146X  |0 (DE-627)89404690X  |0 (DE-576)491093179  |4 aut 
773 0 8 |i Enthalten in  |t Proteomics. Clinical applications  |d Weinheim : Wiley VCH, 2007  |g 13(2019,1) Artikel-Nummer 1800057, 4 Seiten  |h Online-Ressource  |w (DE-627)530281872  |w (DE-600)2317130-3  |w (DE-576)277494516  |x 1862-8354  |7 nnas  |a Cytomine toward an open and collaborative software platform for digital pathology bridged to molecular investigations 
773 1 8 |g volume:13  |g year:2019  |g number:1  |a Cytomine toward an open and collaborative software platform for digital pathology bridged to molecular investigations 
856 4 0 |u https://doi.org/10.1002/prca.201800057  |x Verlag  |x Resolving-System  |3 Volltext 
856 4 0 |u https://onlinelibrary.wiley.com/doi/abs/10.1002/prca.201800057  |x Verlag 
951 |a AR 
992 |a 20191024 
993 |a Article 
994 |a 2019 
998 |g 113707146X  |a Longuespée, Rémi  |m 113707146X:Longuespée, Rémi  |d 910000  |d 910100  |e 910000PL113707146X  |e 910100PL113707146X  |k 0/910000/  |k 1/910000/910100/  |p 7 
999 |a KXP-PPN1679756389  |e 3526927065 
BIB |a Y 
SER |a journal 
JSO |a {"type":{"bibl":"article-journal","media":"Online-Ressource"},"note":["Published online: December 19, 2018","Gesehen am 30.10.2019"],"recId":"1679756389","language":["eng"],"relHost":[{"physDesc":[{"extent":"Online-Ressource"}],"id":{"issn":["1862-8354"],"doi":["10.1002/(ISSN)1862-8354"],"eki":["530281872"],"zdb":["2317130-3"]},"origin":[{"dateIssuedKey":"2007","publisher":"Wiley VCH","dateIssuedDisp":"2007-","publisherPlace":"Weinheim"}],"language":["eng"],"recId":"530281872","disp":"Cytomine toward an open and collaborative software platform for digital pathology bridged to molecular investigationsProteomics. Clinical applications","type":{"bibl":"periodical","media":"Online-Ressource"},"note":["Fortsetzung der Druckausgabe","Gesehen am 5. November 2022"],"part":{"text":"13(2019,1) Artikel-Nummer 1800057, 4 Seiten","volume":"13","year":"2019","issue":"1"},"titleAlt":[{"title":"Proteomics / Clinical applications"},{"title":"Proteomics clinical applications"}],"pubHistory":["1.2007 -"],"title":[{"partname":"Clinical applications","title":"Proteomics","title_sort":"Proteomics"}]}],"title":[{"title_sort":"Cytomine","title":"Cytomine","subtitle":"toward an open and collaborative software platform for digital pathology bridged to molecular investigations"}],"origin":[{"dateIssuedKey":"2019","dateIssuedDisp":"2019"}],"id":{"eki":["1679756389"],"doi":["10.1002/prca.201800057"]},"person":[{"role":"aut","roleDisplay":"VerfasserIn","display":"Rubens, Ulysse","given":"Ulysse","family":"Rubens"},{"family":"Longuespée","given":"Rémi","roleDisplay":"VerfasserIn","display":"Longuespée, Rémi","role":"aut"}],"name":{"displayForm":["Ulysse Rubens, Renaud Hoyoux, Laurent Vanosmael, Mehdy Ouras, Maxime Tasset, Christopher Hamilton, Rémi Longuespée, and Raphaël Marée"]}} 
SRT |a RUBENSULYSCYTOMINE2019 

Similar Items