Assessment of network module identification across complex diseases
In this DREAM challenge, 75 methods for the identification of disease-relevant modules from molecular networks are compared and validated with GWAS data. The authors provide practical guidelines for users and establish benchmarks for network analysis.
Gespeichert in:
| Hauptverfasser: | , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Dokumenttyp: | Article (Journal) |
| Sprache: | Englisch |
| Veröffentlicht: |
30 August 2019
|
| In: |
Nature methods
Year: 2019, Jahrgang: 16, Heft: 9, Pages: 843-852 |
| ISSN: | 1548-7105 |
| DOI: | 10.1038/s41592-019-0509-5 |
| Online-Zugang: | Verlag, lizenzpflichtig, Volltext: https://doi.org/10.1038/s41592-019-0509-5 Verlag, lizenzpflichtig, Volltext: https://www.nature.com/articles/s41592-019-0509-5 |
| Verfasserangaben: | Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer, Ted Natoli, Rajiv Narayan, The DREAM Module Identification Challenge Consortium, Aravind Subramanian, Jitao D. Zhang, Gustavo Stolovitzky, Zoltán Kutalik, Kasper Lage, Donna K. Slonim, Julio Saez-Rodriguez, Lenore J. Cowen, Sven Bergmann and Daniel Marbach |
MARC
| LEADER | 00000caa a2200000 c 4500 | ||
|---|---|---|---|
| 001 | 1694484726 | ||
| 003 | DE-627 | ||
| 005 | 20241223012913.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 200414s2019 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1038/s41592-019-0509-5 |2 doi | |
| 035 | |a (DE-627)1694484726 | ||
| 035 | |a (DE-599)KXP1694484726 | ||
| 035 | |a (OCoLC)1341314752 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rda | ||
| 041 | |a eng | ||
| 084 | |a 33 |2 sdnb | ||
| 100 | 1 | |a Choobdar, Sarvenaz |e VerfasserIn |0 (DE-588)1208249401 |0 (DE-627)1694486591 |4 aut | |
| 245 | 1 | 0 | |a Assessment of network module identification across complex diseases |c Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer, Ted Natoli, Rajiv Narayan, The DREAM Module Identification Challenge Consortium, Aravind Subramanian, Jitao D. Zhang, Gustavo Stolovitzky, Zoltán Kutalik, Kasper Lage, Donna K. Slonim, Julio Saez-Rodriguez, Lenore J. Cowen, Sven Bergmann and Daniel Marbach |
| 264 | 1 | |c 30 August 2019 | |
| 300 | |a 10 | ||
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Gesehen am 14.04.2020 | ||
| 520 | |a In this DREAM challenge, 75 methods for the identification of disease-relevant modules from molecular networks are compared and validated with GWAS data. The authors provide practical guidelines for users and establish benchmarks for network analysis. | ||
| 700 | 1 | |a Ahsen, Mehmet Eren |e VerfasserIn |0 (DE-588)1144963192 |0 (DE-627)1005127972 |0 (DE-576)495539740 |4 aut | |
| 700 | 1 | |a Crawford, Jake |e VerfasserIn |4 aut | |
| 700 | 1 | |a Tomasoni, Mattia |e VerfasserIn |4 aut | |
| 700 | 1 | |a Fang, Tao |e VerfasserIn |4 aut | |
| 700 | 1 | |a Lamparter, David |e VerfasserIn |4 aut | |
| 700 | 1 | |a Lin, Junyuan |e VerfasserIn |4 aut | |
| 700 | 1 | |a Hescott, Benjamin |e VerfasserIn |4 aut | |
| 700 | 1 | |a Hu, Xiaozhe |e VerfasserIn |4 aut | |
| 700 | 1 | |a Mercer, Johnathan |e VerfasserIn |4 aut | |
| 700 | 1 | |a Natoli, Ted |e VerfasserIn |4 aut | |
| 700 | 1 | |a Narayan, Rajiv |e VerfasserIn |4 aut | |
| 700 | 1 | |a Subramanian, Aravind |e VerfasserIn |4 aut | |
| 700 | 1 | |a Zhang, Jitao D. |e VerfasserIn |4 aut | |
| 700 | 1 | |a Stolovitzky, Gustavo |e VerfasserIn |4 aut | |
| 700 | 1 | |8 1\p |a Kutalik, Zoltán |e VerfasserIn |0 (DE-588)1261049748 |0 (DE-627)1889357200 |4 aut | |
| 700 | 1 | |a Lage, Kasper |e VerfasserIn |4 aut | |
| 700 | 1 | |a Slonim, Donna K. |e VerfasserIn |4 aut | |
| 700 | 1 | |a Sáez Rodríguez, Julio |d 1978- |e VerfasserIn |0 (DE-588)133764362 |0 (DE-627)555766632 |0 (DE-576)300083114 |4 aut | |
| 700 | 1 | |a Cowen, Lenore J. |e VerfasserIn |4 aut | |
| 700 | 1 | |a Bergmann, Sven |e VerfasserIn |4 aut | |
| 700 | 1 | |a Marbach, Daniel |d 1980- |e VerfasserIn |0 (DE-588)1116536536 |0 (DE-627)871212706 |0 (DE-576)478481098 |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Nature methods |d London [u.a.] : Nature Publishing Group, 2004 |g 16(2019), 9, Seite 843-852 |h Online-Ressource |w (DE-627)397615310 |w (DE-600)2163081-1 |w (DE-576)118489089 |x 1548-7105 |7 nnas |a Assessment of network module identification across complex diseases |
| 773 | 1 | 8 | |g volume:16 |g year:2019 |g number:9 |g pages:843-852 |g extent:10 |a Assessment of network module identification across complex diseases |
| 856 | 4 | 0 | |u https://doi.org/10.1038/s41592-019-0509-5 |x Verlag |x Resolving-System |z lizenzpflichtig |3 Volltext |
| 856 | 4 | 0 | |u https://www.nature.com/articles/s41592-019-0509-5 |x Verlag |z lizenzpflichtig |3 Volltext |
| 883 | |8 1\p |a cgwrk |d 20241001 |q DE-101 |u https://d-nb.info/provenance/plan#cgwrk | ||
| 951 | |a AR | ||
| 992 | |a 20200414 | ||
| 993 | |a Article | ||
| 994 | |a 2019 | ||
| 998 | |g 133764362 |a Sáez Rodríguez, Julio |m 133764362:Sáez Rodríguez, Julio |d 910000 |d 912900 |e 910000PS133764362 |e 912900PS133764362 |k 0/910000/ |k 1/910000/912900/ |p 19 | ||
| 999 | |a KXP-PPN1694484726 |e 3623041513 | ||
| BIB | |a Y | ||
| SER | |a journal | ||
| JSO | |a {"relHost":[{"title":[{"title_sort":"Nature methods","title":"Nature methods","subtitle":"techniques for life scientists and chemists"}],"note":["Gesehen am 14. August 2018"],"type":{"bibl":"periodical","media":"Online-Ressource"},"origin":[{"publisherPlace":"London [u.a.]","dateIssuedDisp":"2004-","dateIssuedKey":"2004","publisher":"Nature Publishing Group"}],"pubHistory":["1.2004 -"],"id":{"eki":["397615310"],"zdb":["2163081-1"],"issn":["1548-7105"]},"disp":"Assessment of network module identification across complex diseasesNature methods","language":["eng"],"part":{"issue":"9","volume":"16","pages":"843-852","year":"2019","text":"16(2019), 9, Seite 843-852","extent":"10"},"physDesc":[{"extent":"Online-Ressource"}],"recId":"397615310"}],"type":{"bibl":"article-journal","media":"Online-Ressource"},"note":["Gesehen am 14.04.2020"],"language":["eng"],"physDesc":[{"extent":"10 S."}],"recId":"1694484726","id":{"eki":["1694484726"],"doi":["10.1038/s41592-019-0509-5"]},"name":{"displayForm":["Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyuan Lin, Benjamin Hescott, Xiaozhe Hu, Johnathan Mercer, Ted Natoli, Rajiv Narayan, The DREAM Module Identification Challenge Consortium, Aravind Subramanian, Jitao D. Zhang, Gustavo Stolovitzky, Zoltán Kutalik, Kasper Lage, Donna K. Slonim, Julio Saez-Rodriguez, Lenore J. Cowen, Sven Bergmann and Daniel Marbach"]},"origin":[{"dateIssuedDisp":"30 August 2019","dateIssuedKey":"2019"}],"title":[{"title_sort":"Assessment of network module identification across complex diseases","title":"Assessment of network module identification across complex diseases"}],"person":[{"role":"aut","display":"Choobdar, Sarvenaz","family":"Choobdar","given":"Sarvenaz"},{"role":"aut","display":"Ahsen, Mehmet Eren","family":"Ahsen","given":"Mehmet Eren"},{"given":"Jake","family":"Crawford","role":"aut","display":"Crawford, Jake"},{"given":"Mattia","family":"Tomasoni","role":"aut","display":"Tomasoni, Mattia"},{"given":"Tao","display":"Fang, Tao","role":"aut","family":"Fang"},{"family":"Lamparter","role":"aut","display":"Lamparter, David","given":"David"},{"given":"Junyuan","display":"Lin, Junyuan","role":"aut","family":"Lin"},{"display":"Hescott, Benjamin","role":"aut","family":"Hescott","given":"Benjamin"},{"given":"Xiaozhe","family":"Hu","display":"Hu, Xiaozhe","role":"aut"},{"given":"Johnathan","family":"Mercer","display":"Mercer, Johnathan","role":"aut"},{"role":"aut","display":"Natoli, Ted","family":"Natoli","given":"Ted"},{"family":"Narayan","display":"Narayan, Rajiv","role":"aut","given":"Rajiv"},{"display":"Subramanian, Aravind","role":"aut","family":"Subramanian","given":"Aravind"},{"display":"Zhang, Jitao D.","role":"aut","family":"Zhang","given":"Jitao D."},{"role":"aut","display":"Stolovitzky, Gustavo","family":"Stolovitzky","given":"Gustavo"},{"role":"aut","display":"Kutalik, Zoltán","family":"Kutalik","given":"Zoltán"},{"given":"Kasper","family":"Lage","display":"Lage, Kasper","role":"aut"},{"given":"Donna K.","family":"Slonim","role":"aut","display":"Slonim, Donna K."},{"display":"Sáez Rodríguez, Julio","role":"aut","family":"Sáez Rodríguez","given":"Julio"},{"display":"Cowen, Lenore J.","role":"aut","family":"Cowen","given":"Lenore J."},{"role":"aut","display":"Bergmann, Sven","family":"Bergmann","given":"Sven"},{"role":"aut","display":"Marbach, Daniel","family":"Marbach","given":"Daniel"}]} | ||
| SRT | |a CHOOBDARSAASSESSMENT3020 | ||