Deep computational circular RNA analytics from RNA-seq data
Circular RNAs (circRNAs) have been first described as “scrambled exons” in the 1990s. CircRNAs originate from back splicing or exon skipping of linear RNA templates and have continuously gained attention in recent years due to the availability of high-throughput whole-transcriptome sequencing method...
Saved in:
| Main Authors: | , |
|---|---|
| Format: | Chapter/Article |
| Language: | English |
| Published: |
11 January 2018
|
| In: |
Circular RNAs
Year: 2018, Pages: 9-25 |
| DOI: | 10.1007/978-1-4939-7562-4_2 |
| Online Access: | Verlag, lizenzpflichtig, Volltext: https://doi.org/10.1007/978-1-4939-7562-4_2
|
| Author Notes: | Tobias Jakobi, Christoph Dieterich |
MARC
| LEADER | 00000caa a22000002c 4500 | ||
|---|---|---|---|
| 001 | 1694542777 | ||
| 003 | DE-627 | ||
| 005 | 20220818041026.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 200415s2018 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1007/978-1-4939-7562-4_2 |2 doi | |
| 035 | |a (DE-627)1694542777 | ||
| 035 | |a (DE-599)KXP1694542777 | ||
| 035 | |a (OCoLC)1341315027 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rda | ||
| 041 | |a eng | ||
| 084 | |a 32 |2 sdnb | ||
| 100 | 1 | |a Jakobi, Tobias |e VerfasserIn |0 (DE-588)1012533808 |0 (DE-627)661833283 |0 (DE-576)345551605 |4 aut | |
| 245 | 1 | 0 | |a Deep computational circular RNA analytics from RNA-seq data |c Tobias Jakobi, Christoph Dieterich |
| 264 | 1 | |c 11 January 2018 | |
| 300 | |a 17 | ||
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Gesehen am 15.04.2020 | ||
| 520 | |a Circular RNAs (circRNAs) have been first described as “scrambled exons” in the 1990s. CircRNAs originate from back splicing or exon skipping of linear RNA templates and have continuously gained attention in recent years due to the availability of high-throughput whole-transcriptome sequencing methods. Numerous manuscripts describe thousands of circRNAs throughout uni- and multicellular eukaryote species and demonstrated that they are conserved, stable, and abundant in specific tissues or conditions. This manuscript provides a walk-through of our bioinformatics toolbox, which covers all aspects of in silico circRNA analysis, starting from raw sequencing data and back-splicing junction discovery to circRNA quantitation and reconstruction of internal the circRNA structure. | ||
| 650 | 4 | |a Bioinformatics | |
| 650 | 4 | |a Circular | |
| 650 | 4 | |a Circular RNA detection | |
| 650 | 4 | |a RNA analysis | |
| 650 | 4 | |a Whole-transcriptome sequencing | |
| 700 | 1 | |a Dieterich, Christoph |d 1975- |e VerfasserIn |0 (DE-588)130054844 |0 (DE-627)494359269 |0 (DE-576)297972448 |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Circular RNAs |d New York, NY : Humana Press, 2018 |g (2018), Seite 9-25 |h Online-Ressource (XIII, 220 p. 50 illus., 33 illus. in color, online resource) |w (DE-627)1659237289 |w (DE-576)499967186 |z 9781493975624 |7 nnam |a Deep computational circular RNA analytics from RNA-seq data |
| 773 | 1 | 8 | |g year:2018 |g pages:9-25 |g extent:17 |a Deep computational circular RNA analytics from RNA-seq data |
| 856 | 4 | 0 | |u https://doi.org/10.1007/978-1-4939-7562-4_2 |x Verlag |z lizenzpflichtig |3 Volltext |
| 951 | |a AR | ||
| 992 | |a 20200415 | ||
| 993 | |a BookComponentPart | ||
| 994 | |a 2018 | ||
| 998 | |g 130054844 |a Dieterich, Christoph |m 130054844:Dieterich, Christoph |d 910000 |d 910100 |e 910000PD130054844 |e 910100PD130054844 |k 0/910000/ |k 1/910000/910100/ |p 2 |y j | ||
| 998 | |g 1012533808 |a Jakobi, Tobias |m 1012533808:Jakobi, Tobias |d 910000 |d 910100 |e 910000PJ1012533808 |e 910100PJ1012533808 |k 0/910000/ |k 1/910000/910100/ |p 1 |x j | ||
| 999 | |a KXP-PPN1694542777 |e 3623376027 | ||
| BIB | |a Y | ||
| JSO | |a {"note":["Gesehen am 15.04.2020"],"relHost":[{"disp":"Deep computational circular RNA analytics from RNA-seq dataCircular RNAs","language":["eng"],"name":{"displayForm":["edited by Christoph Dieterich, Argyris Papantonis"]},"title":[{"title_sort":"Circular RNAs","subtitle":"Methods and Protocols","title":"Circular RNAs"}],"id":{"doi":["10.1007/978-1-4939-7562-4"],"eki":["1659237289"],"isbn":["9781493975624"]},"recId":"1659237289","person":[{"family":"Dieterich","display":"Dieterich, Christoph","roleDisplay":"HerausgeberIn","role":"edt","given":"Christoph"},{"family":"Papantōnēs","display":"Papantōnēs, Akēs","role":"edt","roleDisplay":"HerausgeberIn","given":"Akēs"}],"physDesc":[{"extent":"Online-Ressource (XIII, 220 p. 50 illus., 33 illus. in color, online resource)"}],"origin":[{"dateIssuedKey":"2018","publisher":"Humana Press","dateIssuedDisp":"2018","publisherPlace":"New York, NY"}],"type":{"media":"Online-Ressource","bibl":"edited-book"},"part":{"year":"2018","text":"(2018), Seite 9-25","extent":"17","pages":"9-25"}}],"recId":"1694542777","person":[{"roleDisplay":"VerfasserIn","role":"aut","display":"Jakobi, Tobias","family":"Jakobi","given":"Tobias"},{"role":"aut","roleDisplay":"VerfasserIn","family":"Dieterich","display":"Dieterich, Christoph","given":"Christoph"}],"id":{"doi":["10.1007/978-1-4939-7562-4_2"],"eki":["1694542777"]},"title":[{"title_sort":"Deep computational circular RNA analytics from RNA-seq data","title":"Deep computational circular RNA analytics from RNA-seq data"}],"name":{"displayForm":["Tobias Jakobi, Christoph Dieterich"]},"language":["eng"],"type":{"bibl":"chapter","media":"Online-Ressource"},"physDesc":[{"extent":"17 S."}],"origin":[{"dateIssuedKey":"2018","dateIssuedDisp":"11 January 2018"}]} | ||
| SRT | |a JAKOBITOBIDEEPCOMPUT1120 | ||