Data management in computational systems biology: exploring standards, tools, databases, and packaging best practices
Computational systems biology involves integrating heterogeneous datasets in order to generate models. These models can assist with understanding and prediction of biological phenomena. Generating datasets and integrating them into models involves a wide range of scientific expertise. As a result th...
Gespeichert in:
| Hauptverfasser: | , |
|---|---|
| Dokumenttyp: | Kapitel/Artikel |
| Sprache: | Englisch |
| Veröffentlicht: |
11 October 2019
|
| In: |
Yeast systems biology
Year: 2019, Pages: 285-314 |
| DOI: | 10.1007/978-1-4939-9736-7_17 |
| Online-Zugang: | Verlag, lizenzpflichtig, Volltext: https://doi.org/10.1007/978-1-4939-9736-7_17
|
| Verfasserangaben: | Natalie J. Stanford, Martin Scharm, Paul D. Dobson, Martin Golebiewski, Michael Hucka, Varun B. Kothamachu, David Nickerson, Stuart Owen, Jürgen Pahle, Ulrike Wittig, Dagmar Waltemath, Carole Goble, Pedro Mendes, Jacky Snoep |
MARC
| LEADER | 00000caa a22000002c 4500 | ||
|---|---|---|---|
| 001 | 1694572927 | ||
| 003 | DE-627 | ||
| 005 | 20220818041348.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 200415s2019 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1007/978-1-4939-9736-7_17 |2 doi | |
| 035 | |a (DE-627)1694572927 | ||
| 035 | |a (DE-599)KXP1694572927 | ||
| 035 | |a (OCoLC)1341315093 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rda | ||
| 041 | |a eng | ||
| 084 | |a 33 |2 sdnb | ||
| 100 | 1 | |a Stanford, Natalie J. |e VerfasserIn |0 (DE-588)1208034359 |0 (DE-627)169434634X |4 aut | |
| 245 | 1 | 0 | |a Data management in computational systems biology |b exploring standards, tools, databases, and packaging best practices |c Natalie J. Stanford, Martin Scharm, Paul D. Dobson, Martin Golebiewski, Michael Hucka, Varun B. Kothamachu, David Nickerson, Stuart Owen, Jürgen Pahle, Ulrike Wittig, Dagmar Waltemath, Carole Goble, Pedro Mendes, Jacky Snoep |
| 264 | 1 | |c 11 October 2019 | |
| 300 | |a 30 | ||
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Gesehen am 15.04.2020 | ||
| 520 | |a Computational systems biology involves integrating heterogeneous datasets in order to generate models. These models can assist with understanding and prediction of biological phenomena. Generating datasets and integrating them into models involves a wide range of scientific expertise. As a result these datasets are often collected by one set of researchers, and exchanged with others researchers for constructing the models. For this process to run smoothly the data and models must be FAIR—findable, accessible, interoperable, and reusable. In order for data and models to be FAIR they must be structured in consistent and predictable ways, and described sufficiently for other researchers to understand them. Furthermore, these data and models must be shared with other researchers, with appropriately controlled sharing permissions, before and after publication. In this chapter we explore the different data and model standards that assist with structuring, describing, and sharing. We also highlight the popular standards and sharing databases within computational systems biology. | ||
| 650 | 4 | |a Data storage | |
| 650 | 4 | |a Databases | |
| 650 | 4 | |a FAIR | |
| 650 | 4 | |a Metadata | |
| 650 | 4 | |a Model storage | |
| 650 | 4 | |a Reproducible research | |
| 650 | 4 | |a Standards | |
| 700 | 1 | |a Pahle, Jürgen |d 1976- |e VerfasserIn |0 (DE-588)136080243 |0 (DE-627)577146467 |0 (DE-576)300819382 |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Yeast systems biology |b 2nd ed. 2019 |d New York, NY : Humana, 2019 |g (2019), Seite 285-314 |h 1 Online-Ressource (XVI, 447 p. 73 illus., 48 illus. in color) |w (DE-627)1681727730 |z 9781493997367 |7 nnam |a Data management in computational systems biology exploring standards, tools, databases, and packaging best practices |
| 773 | 1 | 8 | |g year:2019 |g pages:285-314 |g extent:30 |a Data management in computational systems biology exploring standards, tools, databases, and packaging best practices |
| 856 | 4 | 0 | |u https://doi.org/10.1007/978-1-4939-9736-7_17 |x Verlag |z lizenzpflichtig |3 Volltext |
| 951 | |a AR | ||
| 992 | |a 20200415 | ||
| 993 | |a BookComponentPart | ||
| 994 | |a 2019 | ||
| 998 | |g 136080243 |a Pahle, Jürgen |m 136080243:Pahle, Jürgen |d 700000 |d 716000 |e 700000PP136080243 |e 716000PP136080243 |k 0/700000/ |k 1/700000/716000/ |p 9 | ||
| 999 | |a KXP-PPN1694572927 |e 362381685X | ||
| BIB | |a Y | ||
| JSO | |a {"title":[{"subtitle":"exploring standards, tools, databases, and packaging best practices","title":"Data management in computational systems biology","title_sort":"Data management in computational systems biology"}],"person":[{"family":"Stanford","role":"aut","display":"Stanford, Natalie J.","given":"Natalie J."},{"display":"Pahle, Jürgen","given":"Jürgen","role":"aut","family":"Pahle"}],"physDesc":[{"extent":"30 S."}],"id":{"eki":["1694572927"],"doi":["10.1007/978-1-4939-9736-7_17"]},"language":["eng"],"name":{"displayForm":["Natalie J. Stanford, Martin Scharm, Paul D. Dobson, Martin Golebiewski, Michael Hucka, Varun B. Kothamachu, David Nickerson, Stuart Owen, Jürgen Pahle, Ulrike Wittig, Dagmar Waltemath, Carole Goble, Pedro Mendes, Jacky Snoep"]},"type":{"bibl":"chapter","media":"Online-Ressource"},"recId":"1694572927","relHost":[{"id":{"eki":["1681727730"],"isbn":["9781493997367"],"doi":["10.1007/978-1-4939-9736-7"]},"language":["eng"],"name":{"displayForm":["edited by Stephen G. Oliver, Juan Castrillo"]},"recId":"1681727730","origin":[{"publisherPlace":"New York, NY","edition":"2nd ed. 2019","dateIssuedDisp":"2019","publisher":"Humana","editionNo":2,"dateIssuedKey":"2019"}],"part":{"pages":"285-314","year":"2019","text":"(2019), Seite 285-314","extent":"30"},"title":[{"title_sort":"Yeast systems biology","subtitle":"methods and protocols","title":"Yeast systems biology"}],"person":[{"family":"Oliver","role":"edt","given":"Stephen G.","display":"Oliver, Stephen G."},{"role":"edt","display":"Castrillo, Juan I.","given":"Juan I.","family":"Castrillo"}],"disp":"Data management in computational systems biology exploring standards, tools, databases, and packaging best practicesYeast systems biology","physDesc":[{"extent":"1 Online-Ressource (XVI, 447 p. 73 illus., 48 illus. in color)"}],"type":{"bibl":"edited-book","media":"Online-Ressource"},"relMultPart":[{"type":{"media":"Online-Ressource","bibl":"serial"},"disp":"Methods in molecular biology","physDesc":[{"extent":"Online-Ressource"}],"part":{"number":["2049"],"number_sort":["2049"]},"title":[{"title_sort":"Methods in molecular biology","title":"Methods in molecular biology"}],"pubHistory":["1.1984 -"],"note":["Gesehen am 05.11.12"],"origin":[{"publisherPlace":"Totowa, NJ ; [Heidelberg]","dateIssuedKey":"1984","dateIssuedDisp":"1984-","publisher":"Humana Press ; [Springer]"}],"recId":"599671882","dispAlt":"Methods in molecular biology","language":["eng"],"id":{"issn":["1940-6029"],"eki":["599671882"],"zdb":["2493551-7"]}}]}],"origin":[{"dateIssuedKey":"2019","dateIssuedDisp":"11 October 2019"}],"note":["Gesehen am 15.04.2020"]} | ||
| SRT | |a STANFORDNADATAMANAGE1120 | ||