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MITI minimum information guidelines for highly multiplexed tissue images

The imminent release of tissue atlases combining multichannel microscopy with single-cell sequencing and other omics data from normal and diseased specimens creates an urgent need for data and metadata standards to guide data deposition, curation and release. We describe a Minimum Information about...

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Main Authors: Schapiro, Denis (Author) , Yapp, Clarence (Author) , Sokolov, Artem (Author) , Reynolds, Sheila M. (Author) , Chen, Yu-An (Author) , Sudar, Damir (Author) , Xie, Yubin (Author) , Muhlich, Jeremy (Author) , Arias-Camison, Raquel (Author) , Arena, Sarah (Author) , Taylor, Adam J. (Author) , Nikolov, Milen (Author) , Tyler, Madison (Author) , Lin, Jia-Ren (Author) , Burlingame, Erik A. (Author) , Chang, Young H. (Author) , Farhi, Samouil L. (Author) , Thorsson, Vésteinn (Author) , Venkatamohan, Nithya (Author) , Drewes, Julia L. (Author) , Pe’er, Dana (Author) , Gutman, David A. (Author) , Herrmann, Markus D. (Author) , Gehlenborg, Nils (Author) , Bankhead, Peter (Author) , Roland, Joseph T. (Author) , Herndon, John M. (Author) , Snyder, Michael P. (Author) , Angelo, Michael (Author) , Nolan, Garry (Author) , Swedlow, Jason R. (Author) , Schultz, Nikolaus (Author) , Merrick, Daniel T. (Author) , Mazzili, Sarah A. (Author) , Cerami, Ethan (Author) , Rodig, Scott J. (Author) , Santagata, Sandro (Author) , Sorger, Peter K. (Author)
Format: Article (Journal) Editorial
Language:English
Published: 11 March 2022
In: Nature methods
Year: 2022, Volume: 19, Issue: 3, Pages: 262-267
ISSN:1548-7105
DOI:10.1038/s41592-022-01415-4
Online Access:Verlag, lizenzpflichtig, Volltext: https://doi.org/10.1038/s41592-022-01415-4
Verlag, lizenzpflichtig, Volltext: https://www.nature.com/articles/s41592-022-01415-4
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Author Notes:Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar, Yubin Xie, Jeremy Muhlich, Raquel Arias-Camison, Sarah Arena, Adam J. Taylor, Milen Nikolov, Madison Tyler, Jia-Ren Lin, Erik A. Burlingame, Young H. Chang, Samouil L. Farhi, Vésteinn Thorsson, Nithya Venkatamohan, Julia L. Drewes, Dana Pe’er, David A. Gutman, Markus D. Herrmann, Nils Gehlenborg, Peter Bankhead, Joseph T. Roland, John M. Herndon, Michael P. Snyder, Michael Angelo, Garry Nolan, Jason R. Swedlow, Nikolaus Schultz, Daniel T. Merrick, Sarah A. Mazzili, Ethan Cerami, Scott J. Rodig, Sandro Santagata and Peter K. Sorger
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Summary:The imminent release of tissue atlases combining multichannel microscopy with single-cell sequencing and other omics data from normal and diseased specimens creates an urgent need for data and metadata standards to guide data deposition, curation and release. We describe a Minimum Information about Highly Multiplexed Tissue Imaging (MITI) standard that applies best practices developed for genomics and for other microscopy data to highly multiplexed tissue images and traditional histology.
Item Description:Gesehen am 02.06.2022
Physical Description:Online Resource
ISSN:1548-7105
DOI:10.1038/s41592-022-01415-4

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