Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gene expression. The analysis of such changes is complicated, as they consist of multi-layered temporal responses. While classical analy...
Saved in:
| Main Authors: | , , , , , , |
|---|---|
| Format: | Article (Journal) |
| Language: | English |
| Published: |
30 November 2010
|
| In: |
BMC bioinformatics
Year: 2010, Volume: 11, Pages: 1-14 |
| ISSN: | 1471-2105 |
| DOI: | 10.1186/1471-2105-11-585 |
| Online Access: | Resolving-System, kostenfrei, Volltext: https://doi.org/10.1186/1471-2105-11-585 Verlag, kostenfrei, Volltext: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-585 |
| Author Notes: | Andreas Kowarsch, Florian Blöchl, Sebastian Bohl, Maria Saile, Norbert Gretz, Ursula Klingmüller, Fabian J. Theis |
MARC
| LEADER | 00000caa a2200000 c 4500 | ||
|---|---|---|---|
| 001 | 1839798882 | ||
| 003 | DE-627 | ||
| 005 | 20230710145434.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 230322s2010 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1186/1471-2105-11-585 |2 doi | |
| 035 | |a (DE-627)1839798882 | ||
| 035 | |a (DE-599)KXP1839798882 | ||
| 035 | |a (OCoLC)1389807115 | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rda | ||
| 041 | |a eng | ||
| 084 | |a 32 |2 sdnb | ||
| 100 | 1 | |a Kowarsch, Andreas |e VerfasserIn |0 (DE-588)102249693X |0 (DE-627)716993740 |0 (DE-576)365501522 |4 aut | |
| 245 | 1 | 0 | |a Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation |c Andreas Kowarsch, Florian Blöchl, Sebastian Bohl, Maria Saile, Norbert Gretz, Ursula Klingmüller, Fabian J. Theis |
| 264 | 1 | |c 30 November 2010 | |
| 300 | |a 14 | ||
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a Gesehen am 22.03.2023 | ||
| 520 | |a External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gene expression. The analysis of such changes is complicated, as they consist of multi-layered temporal responses. While classical analyses based on clustering or gene set enrichment only partly reveal this information, matrix factorization techniques are well suited for a detailed temporal analysis. In signal processing, factorization techniques incorporating data properties like spatial and temporal correlation structure have shown to be robust and computationally efficient. However, such correlation-based methods have so far not be applied in bioinformatics, because large scale biological data rarely imply a natural order that allows the definition of a delayed correlation function. | ||
| 650 | 4 | |a Acute Phase Protein | |
| 650 | 4 | |a Gene Regulatory Network | |
| 650 | 4 | |a GraDe Algorithm | |
| 650 | 4 | |a Network Component Analysis | |
| 650 | 4 | |a Nonnegative Matrix Factorization | |
| 700 | 1 | |a Blöchl, Florian |e VerfasserIn |4 aut | |
| 700 | 1 | |a Bohl, Sebastian |e VerfasserIn |0 (DE-588)140261591 |0 (DE-627)616968531 |0 (DE-576)316143944 |4 aut | |
| 700 | 1 | |a Saile, Maria |e VerfasserIn |4 aut | |
| 700 | 1 | |a Gretz, Norbert |e VerfasserIn |4 aut | |
| 700 | 1 | |a Klingmüller, Ursula |d 1964- |e VerfasserIn |0 (DE-588)1098573455 |0 (DE-627)857742876 |0 (DE-576)46917014X |4 aut | |
| 700 | 1 | |a Theis, Fabian J. |e VerfasserIn |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t BMC bioinformatics |d London : BioMed Central, 2000 |g 11(2010), Artikel-ID 585, Seite 1-14 |h Online-Ressource |w (DE-627)326644814 |w (DE-600)2041484-5 |w (DE-576)107014688 |x 1471-2105 |7 nnas |a Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation |
| 773 | 1 | 8 | |g volume:11 |g year:2010 |g elocationid:585 |g pages:1-14 |g extent:14 |a Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation |
| 856 | 4 | 0 | |u https://doi.org/10.1186/1471-2105-11-585 |x Resolving-System |x Verlag |z kostenfrei |3 Volltext |
| 856 | 4 | 0 | |u https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-585 |x Verlag |z kostenfrei |3 Volltext |
| 951 | |a AR | ||
| 992 | |a 20230322 | ||
| 993 | |a Article | ||
| 994 | |a 2010 | ||
| 998 | |g 1098573455 |a Klingmüller, Ursula |m 1098573455:Klingmüller, Ursula |d 140000 |e 140000PK1098573455 |k 0/140000/ |p 6 | ||
| 998 | |g 140261591 |a Bohl, Sebastian |m 140261591:Bohl, Sebastian |p 3 | ||
| 999 | |a KXP-PPN1839798882 |e 4294962135 | ||
| BIB | |a Y | ||
| SER | |a journal | ||
| JSO | |a {"name":{"displayForm":["Andreas Kowarsch, Florian Blöchl, Sebastian Bohl, Maria Saile, Norbert Gretz, Ursula Klingmüller, Fabian J. Theis"]},"title":[{"title_sort":"Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation","title":"Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation"}],"type":{"bibl":"article-journal","media":"Online-Ressource"},"person":[{"family":"Kowarsch","display":"Kowarsch, Andreas","role":"aut","given":"Andreas"},{"given":"Florian","role":"aut","display":"Blöchl, Florian","family":"Blöchl"},{"given":"Sebastian","family":"Bohl","display":"Bohl, Sebastian","role":"aut"},{"given":"Maria","role":"aut","display":"Saile, Maria","family":"Saile"},{"given":"Norbert","role":"aut","display":"Gretz, Norbert","family":"Gretz"},{"given":"Ursula","role":"aut","display":"Klingmüller, Ursula","family":"Klingmüller"},{"given":"Fabian J.","family":"Theis","display":"Theis, Fabian J.","role":"aut"}],"id":{"eki":["1839798882"],"doi":["10.1186/1471-2105-11-585"]},"origin":[{"dateIssuedDisp":"30 November 2010","dateIssuedKey":"2010"}],"language":["eng"],"note":["Gesehen am 22.03.2023"],"relHost":[{"disp":"Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulationBMC bioinformatics","title":[{"title":"BMC bioinformatics","title_sort":"BMC bioinformatics"}],"part":{"text":"11(2010), Artikel-ID 585, Seite 1-14","year":"2010","pages":"1-14","volume":"11","extent":"14"},"id":{"zdb":["2041484-5"],"issn":["1471-2105"],"eki":["326644814"]},"origin":[{"publisher":"BioMed Central ; Springer","dateIssuedKey":"2000","publisherPlace":"London ; Berlin ; Heidelberg","dateIssuedDisp":"2000-"}],"language":["eng"],"pubHistory":["1.2000 -"],"type":{"media":"Online-Ressource","bibl":"periodical"},"note":["Gesehen am 22.05.20"],"physDesc":[{"extent":"Online-Ressource"}],"recId":"326644814"}],"recId":"1839798882","physDesc":[{"extent":"14 S."}]} | ||
| SRT | |a KOWARSCHANKNOWLEDGEB3020 | ||