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Figeno: multi-region genomic figures with long-read support

The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modi...

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Bibliographische Detailangaben
Hauptverfasser: Sollier, Etienne (VerfasserIn) , Heilmann, Jessica (VerfasserIn) , Gerhäuser, Clarissa (VerfasserIn) , Scherer, Michael (VerfasserIn) , Plass, Christoph (VerfasserIn) , Lutsik, Pavlo (VerfasserIn)
Dokumenttyp: Article (Journal)
Sprache:Englisch
Veröffentlicht: June 2024
In: Bioinformatics
Year: 2024, Jahrgang: 40, Heft: 6, Pages: 1-4
ISSN:1367-4811
DOI:10.1093/bioinformatics/btae354
Online-Zugang:Verlag, kostenfrei, Volltext: https://doi.org/10.1093/bioinformatics/btae354
Volltext
Verfasserangaben:Etienne Sollier, Jessica Heilmann, Clarissa Gerhauser, Michael Scherer, Christoph Plass, Pavlo Lutsik
Beschreibung
Zusammenfassung:The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modifications. In addition, we support epigenomic data including ATAC-seq, ChIP-seq or HiC, as well as whole genome sequencing data with copy numbers and structural variants.Figeno is available as a python package with both a command line and graphical user interface. It can be installed via PyPI and the source code is available at https://github.com/CompEpigen/figeno.
Beschreibung:Veröffentlicht: 10. Juni 2024
Gesehen am 21.11.2024
Beschreibung:Online Resource
ISSN:1367-4811
DOI:10.1093/bioinformatics/btae354

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