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MedShapeNet: a large-scale dataset of 3D medical shapes for computer vision

Objectives The shape is commonly used to describe the objects. State-of-the-art algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from the growing popularity of ShapeNet (51,300...

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Bibliographische Detailangaben
Hauptverfasser: Li, Jianning (VerfasserIn) , Zhou, Zongwei (VerfasserIn) , Yang, Jiancheng (VerfasserIn) , Pepe, Antonio (VerfasserIn) , Gsaxner, Christina (VerfasserIn) , Luijten, Gijs (VerfasserIn) , Qu, Chongyu (VerfasserIn) , Zhang, Tiezheng (VerfasserIn) , Chen, Xiaoxi (VerfasserIn) , Li, Wenxuan (VerfasserIn) , Wodzinski, Marek (VerfasserIn) , Friedrich, Paul (VerfasserIn) , Xie, Kangxian (VerfasserIn) , Jin, Yuan (VerfasserIn) , Ambigapathy, Narmada (VerfasserIn) , Nasca, Enrico (VerfasserIn) , Solak, Naida (VerfasserIn) , Melito, Gian Marco (VerfasserIn) , Vu, Viet Duc (VerfasserIn) , Memon, Afaque R. (VerfasserIn) , Schlachta, Christopher (VerfasserIn) , Ribaupierre, Sandrine de (VerfasserIn) , Patel, Rajni V. (VerfasserIn) , Eagleson, Roy (VerfasserIn) , Chen, Xiaojun (VerfasserIn) , Mächler, Heinrich (VerfasserIn) , Kirschke, Jan (VerfasserIn) , Rosa, Ezequiel de la (VerfasserIn) , Christ, Patrick Ferdinand (VerfasserIn) , Li, Hongwei Bran (VerfasserIn) , Ellis, David G. (VerfasserIn) , Aizenberg, Michele R. (VerfasserIn) , Gatidis, Sergios (VerfasserIn) , Küstner, Thomas (VerfasserIn) , Shusharina, Nadya (VerfasserIn) , Heller, Nicholas (VerfasserIn) , Andrearczyk, Vincent (VerfasserIn) , Depeursinge, Adrien (VerfasserIn) , Hatt, Mathieu (VerfasserIn) , Sekuboyina, Anjany (VerfasserIn) , Löffler, Maximilian (VerfasserIn) , Liebl, Hans (VerfasserIn) , Dorent, Reuben (VerfasserIn) , Vercauteren, Tom (VerfasserIn) , Shapey, Jonathan (VerfasserIn) , Kujawa, Aaron (VerfasserIn) , Cornelissen, Stefan (VerfasserIn) , Langenhuizen, Patrick (VerfasserIn) , Ben-Hamadou, Achraf (VerfasserIn) , Rekik, Ahmed (VerfasserIn) , Pujades, Sergi (VerfasserIn) , Boyer, Edmond (VerfasserIn) , Bolelli, Federico (VerfasserIn) , Grana, Costantino (VerfasserIn) , Lumetti, Luca (VerfasserIn) , Salehi, Hamidreza (VerfasserIn) , Ma, Jun (VerfasserIn) , Zhang, Yao (VerfasserIn) , Gharleghi, Ramtin (VerfasserIn) , Beier, Susann (VerfasserIn) , Sowmya, Arcot (VerfasserIn) , Garza-Villarreal, Eduardo A. (VerfasserIn) , Balducci, Thania (VerfasserIn) , Angeles-Valdez, Diego (VerfasserIn) , Souza, Roberto (VerfasserIn) , Rittner, Leticia (VerfasserIn) , Frayne, Richard (VerfasserIn) , Ji, Yuanfeng (VerfasserIn) , Ferrari, Vincenzo (VerfasserIn) , Chatterjee, Soumick (VerfasserIn) , Dubost, Florian (VerfasserIn) , Schreiber, Stefanie (VerfasserIn) , Mattern, Hendrik (VerfasserIn) , Speck, Oliver (VerfasserIn) , Haehn, Daniel (VerfasserIn) , John, Christoph (VerfasserIn) , Nürnberger, Andreas (VerfasserIn) , Pedrosa, João (VerfasserIn) , Ferreira, Carlos (VerfasserIn) , Aresta, Guilherme (VerfasserIn) , Cunha, António (VerfasserIn) , Campilho, Aurélio (VerfasserIn) , Suter, Yannick (VerfasserIn) , Garcia, Jose (VerfasserIn) , Lalande, Alain (VerfasserIn) , Vandenbossche, Vicky (VerfasserIn) , Oevelen, Aline van (VerfasserIn) , Duquesne, Kate (VerfasserIn) , Mekhzoum, Hamza (VerfasserIn) , Vandemeulebroucke, Jef (VerfasserIn) , Audenaert, Emmanuel (VerfasserIn) , Krebs, Claudia (VerfasserIn) , Leeuwen, Timo van (VerfasserIn) , Vereecke, Evie (VerfasserIn) , Heidemeyer, Hauke (VerfasserIn) , Röhrig, Rainer (VerfasserIn) , Hölzle, Frank (VerfasserIn) , Badeli, Vahid (VerfasserIn) , Krieger, Kathrin (VerfasserIn) , Gunzer, Matthias (VerfasserIn) , Chen, Jianxu (VerfasserIn) , Meegdenburg, Timo van (VerfasserIn) , Dada, Amin (VerfasserIn) , Balzer, Miriam (VerfasserIn) , Fragemann, Jana (VerfasserIn) , Jonske, Frederic (VerfasserIn) , Rempe, Moritz (VerfasserIn) , Malorodov, Stanislav (VerfasserIn) , Bahnsen, Fin Hendrik (VerfasserIn) , Seibold, Constantin (VerfasserIn) , Jaus, Alexander (VerfasserIn) , Marinov, Zdravko (VerfasserIn) , Jaeger, Paul F. (VerfasserIn) , Stiefelhagen, Rainer (VerfasserIn) , Santos, Ana Sofia (VerfasserIn) , Lindo, Mariana (VerfasserIn) , Ferreira, André (VerfasserIn) , Alves, Victor (VerfasserIn) , Kamp, Michael (VerfasserIn) , Abourayya, Amr (VerfasserIn) , Nensa, Felix (VerfasserIn) , Hörst, Fabian (VerfasserIn) , Brehmer, Alexander (VerfasserIn) , Heine, Lukas (VerfasserIn) , Hanusrichter, Yannik (VerfasserIn) , Weßling, Martin (VerfasserIn) , Dudda, Marcel (VerfasserIn) , Podleska, Lars Erik (VerfasserIn) , Fink, Matthias A. (VerfasserIn) , Keyl, Julius (VerfasserIn) , Tserpes, Konstantinos (VerfasserIn) , Kim, Moon Sung (VerfasserIn) , Elhabian, Shireen (VerfasserIn) , Lamecker, Hans (VerfasserIn) , Zukić, Dženan (VerfasserIn) , Paniagua, Beatriz (VerfasserIn) , Wachinger, Christian (VerfasserIn) , Urschler, Martin (VerfasserIn) , Duong, Luc (VerfasserIn) , Wasserthal, Jakob (VerfasserIn) , Hoyer, Peter F. (VerfasserIn) , Basu, Oliver (VerfasserIn) , Maal, Thomas (VerfasserIn) , Witjes, Max J. H. (VerfasserIn) , Schiele, Gregor (VerfasserIn) , Chang, Ti-Chiun (VerfasserIn) , Ahmadi, Seyed-Ahmad (VerfasserIn) , Luo, Ping (VerfasserIn) , Menze, Bjoern (VerfasserIn) , Reyes, Mauricio (VerfasserIn) , Deserno, Thomas M. (VerfasserIn) , Davatzikos, Christos (VerfasserIn) , Puladi, Behrus (VerfasserIn) , Fua, Pascal (VerfasserIn) , Yuille, Alan L. (VerfasserIn) , Kleesiek, Jens Philipp (VerfasserIn) , Egger, Jan (VerfasserIn)
Dokumenttyp: Article (Journal)
Sprache:Englisch
Veröffentlicht: Januar 2025
In: Biomedical engineering
Year: 2025, Jahrgang: 70, Heft: 1, Pages: 71-90
ISSN:1862-278X
DOI:10.1515/bmt-2024-0396
Online-Zugang:Verlag, kostenfrei, Volltext: http://dx.doi.org/10.1515/bmt-2024-0396
Verlag, kostenfrei, Volltext: https://www.degruyterbrill.com/document/doi/10.1515/bmt-2024-0396/html
Volltext
Verfasserangaben:Jianning Li, Zongwei Zhou, Jiancheng Yang, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Viet Duc Vu, Afaque R. Memon, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Xiaojun Chen, Heinrich Mächler, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian T. Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Vincenzo Ferrari, Soumick Chatterjee, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Andreas Nürnberger, João Pedrosa, Carlos Ferreira, Guilherme Aresta, António Cunha, Aurélio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Emmanuel Audenaert, Claudia Krebs, Timo van Leeuwen, Evie Vereecke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Timo van Meegdenburg, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin H. Bahnsen, Constantin Seibold, Alexander Jaus, Zdravko Marinov, Paul F. Jaeger, Rainer Stiefelhagen, Ana Sofia Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dženan Zukić, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Ping Luo, Bjoern Menze, Mauricio Reyes, Thomas M. Deserno, Christos Davatzikos, Behrus Puladi, Pascal Fua, Alan L. Yuille, Jens Kleesiek and Jan Egger

MARC

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100 1 |a Li, Jianning  |e VerfasserIn  |0 (DE-588)1354234049  |0 (DE-627)1915524849  |4 aut 
245 1 0 |a MedShapeNet  |b a large-scale dataset of 3D medical shapes for computer vision  |c Jianning Li, Zongwei Zhou, Jiancheng Yang, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Viet Duc Vu, Afaque R. Memon, Christopher Schlachta, Sandrine De Ribaupierre, Rajnikant Patel, Roy Eagleson, Xiaojun Chen, Heinrich Mächler, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian T. Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Vincenzo Ferrari, Soumick Chatterjee, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Andreas Nürnberger, João Pedrosa, Carlos Ferreira, Guilherme Aresta, António Cunha, Aurélio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Emmanuel Audenaert, Claudia Krebs, Timo van Leeuwen, Evie Vereecke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Timo van Meegdenburg, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin H. Bahnsen, Constantin Seibold, Alexander Jaus, Zdravko Marinov, Paul F. Jaeger, Rainer Stiefelhagen, Ana Sofia Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dženan Zukić, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Ping Luo, Bjoern Menze, Mauricio Reyes, Thomas M. Deserno, Christos Davatzikos, Behrus Puladi, Pascal Fua, Alan L. Yuille, Jens Kleesiek and Jan Egger 
264 1 |c Januar 2025 
300 |b Illustrationen 
300 |a 20 
336 |a Text  |b txt  |2 rdacontent 
337 |a Computermedien  |b c  |2 rdamedia 
338 |a Online-Ressource  |b cr  |2 rdacarrier 
500 |a Online veröffentlicht am 30. Dezember 2024 
500 |a Gesehen am 16.12.2025 
520 |a Objectives The shape is commonly used to describe the objects. State-of-the-art algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from the growing popularity of ShapeNet (51,300 models) and Princeton ModelNet (127,915 models). However, a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D models of surgical instruments is missing. Methods We present MedShapeNet to translate data-driven vision algorithms to medical applications and to adapt state-of-the-art vision algorithms to medical problems. As a unique feature, we directly model the majority of shapes on the imaging data of real patients. We present use cases in classifying brain tumors, skull reconstructions, multi-class anatomy completion, education, and 3D printing. Results By now, MedShapeNet includes 23 datasets with more than 100,000 shapes that are paired with annotations (ground truth). Our data is freely accessible via a web interface and a Python application programming interface and can be used for discriminative, reconstructive, and variational benchmarks as well as various applications in virtual, augmented, or mixed reality, and 3D printing. Conclusions MedShapeNet contains medical shapes from anatomy and surgical instruments and will continue to collect data for benchmarks and applications. The project page is: https://medshapenet.ikim.nrw/. 
650 4 |a 3D medical shapes 
650 4 |a anatomy education 
650 4 |a augmented reality 
650 4 |a benchmark 
650 4 |a shapeomics 
650 4 |a virtual reality 
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773 0 8 |i Enthalten in  |t Biomedical engineering  |d Berlin [u.a.] : de Gruyter, 1998  |g 70(2025), 1 vom: Jan., Seite 71-90  |w (DE-627)511913389  |w (DE-600)2234381-7  |w (DE-576)276272935  |x 1862-278X  |7 nnas  |a MedShapeNet a large-scale dataset of 3D medical shapes for computer vision 
773 1 8 |g volume:70  |g year:2025  |g number:1  |g month:01  |g pages:71-90  |g extent:20  |a MedShapeNet a large-scale dataset of 3D medical shapes for computer vision 
856 4 0 |u http://dx.doi.org/10.1515/bmt-2024-0396  |x Verlag  |x Resolving-System  |z kostenfrei  |3 Volltext  |7 0 
856 4 0 |u https://www.degruyterbrill.com/document/doi/10.1515/bmt-2024-0396/html  |x Verlag  |z kostenfrei  |3 Volltext  |7 0 
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SRT |a LIJIANNINGMEDSHAPENE2025 

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