The proteogenomic landscape of multiple myeloma reveals insights into disease biology and therapeutic opportunities

Multiple myeloma (MM) is a plasma cell malignancy of the bone marrow. Despite therapeutic advances, MM remains incurable, and better risk stratification as well as new therapies are therefore highly needed. The proteome of MM has not been systematically assessed before and holds the potential to unc...

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Main Authors: Ramberger, Evelyn (Author) , Sapozhnikova, Valeriia (Author) , Ng, Yuen Lam Dora (Author) , Dolnik, Anna (Author) , Ziehm, Matthias (Author) , Popp, Oliver (Author) , Sträng, Eric (Author) , Kull, Miriam (Author) , Grünschläger, Florian (Author) , Krüger, Josefine (Author) , Benary, Manuela (Author) , Müller, Sina (Author) , Gao, Xiang (Author) , Murgai, Arunima (Author) , Haji, Mohamed (Author) , Schmidt, Annika (Author) , Lutz, Raphael (Author) , Nogai, Axel (Author) , Braune, Jan (Author) , Laue, Dominik (Author) , Langer, Christian (Author) , Khandanpour, Cyrus (Author) , Bassermann, Florian (Author) , Döhner, Hartmut (Author) , Engelhardt, Monika (Author) , Straka, Christian (Author) , Hundemer, Michael (Author) , Beule, Dieter (Author) , Haas, Simon (Author) , Keller, Ulrich (Author) , Einsele, Hermann (Author) , Bullinger, Lars (Author) , Knop, Stefan (Author) , Mertins, Philipp (Author) , Krönke, Jan (Author)
Format: Article (Journal)
Language:English
Published: August 2024
In: Nature cancer
Year: 2024, Volume: 5, Issue: 8, Pages: 1267-1284
ISSN:2662-1347
DOI:10.1038/s43018-024-00784-3
Online Access:Verlag, kostenfrei, Volltext: https://doi.org/10.1038/s43018-024-00784-3
Verlag, kostenfrei, Volltext: https://www.nature.com/articles/s43018-024-00784-3
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Author Notes:Evelyn Ramberger, Valeriia Sapozhnikova, Yuen Lam Dora Ng, Anna Dolnik, Matthias Ziehm, Oliver Popp, Eric Sträng, Miriam Kull, Florian Grünschläger, Josefine Krüger, Manuela Benary, Sina Müller, Xiang Gao, Arunima Murgai, Mohamed Haji, Annika Schmidt, Raphael Lutz, Axel Nogai, Jan Braune, Dominik Laue, Christian Langer, Cyrus Khandanpour, Florian Bassermann, Hartmut Döhner, Monika Engelhardt, Christian Straka, Michael Hundemer, Dieter Beule, Simon Haas, Ulrich Keller, Hermann Einsele, Lars Bullinger, Stefan Knop, Philipp Mertins & Jan Krönke

MARC

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520 |a Multiple myeloma (MM) is a plasma cell malignancy of the bone marrow. Despite therapeutic advances, MM remains incurable, and better risk stratification as well as new therapies are therefore highly needed. The proteome of MM has not been systematically assessed before and holds the potential to uncover insight into disease biology and improved prognostication in addition to genetic and transcriptomic studies. Here we provide a comprehensive multiomics analysis including deep tandem mass tag-based quantitative global (phospho)proteomics, RNA sequencing, and nanopore DNA sequencing of 138 primary patient-derived plasma cell malignancies encompassing treatment-naive MM, plasma cell leukemia and the premalignancy monoclonal gammopathy of undetermined significance, as well as healthy controls. We found that the (phospho)proteome of malignant plasma cells are highly deregulated as compared with healthy plasma cells and is both defined by chromosomal alterations as well as posttranscriptional regulation. A prognostic protein signature was identified that is associated with aggressive disease independent of established risk factors in MM. Integration with functional genetics and single-cell RNA sequencing revealed general and genetic subtype-specific deregulated proteins and pathways in plasma cell malignancies that include potential targets for (immuno)therapies. Our study demonstrates the potential of proteogenomics in cancer and provides an easily accessible resource for investigating protein regulation and new therapeutic approaches in MM. 
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