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CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks

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Qualitative reasoning frameworks, such as the Sign Consistency Model (SCM), enable modelling regulatory networks to check whether observed behaviour can be explained or if unobserved behaviour can be predicted. The BioASP software collection offers ideal tools for such analyses. Additionally, the Cy...

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Bibliographic Details
Main Authors: Kittas, Aristotelis (Author) , Barozet, Amélie (Author) , Sereshti, Jekaterina (Author) , Grabe, Niels (Author) , Tsoka, Sophia (Author)
Format: Article (Journal)
Language:English
Published: 11 July 2015
In: BMC systems biology
Year: 2015, Volume: 9, Issue: 1
ISSN:1752-0509
DOI:10.1186/s12918-015-0179-6
Online Access:Resolving-System, lizenzpflichtig, Volltext: https://doi.org/10.1186/s12918-015-0179-6
Verlag, lizenzpflichtig, Volltext: https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-015-0179-6
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Author Notes:Aristotelis Kittas, Amélie Barozet, Jekaterina Sereshti, Niels Grabe and Sophia Tsoka
Description
Summary:Qualitative reasoning frameworks, such as the Sign Consistency Model (SCM), enable modelling regulatory networks to check whether observed behaviour can be explained or if unobserved behaviour can be predicted. The BioASP software collection offers ideal tools for such analyses. Additionally, the Cytoscape platform can offer extensive functionality and visualisation capabilities. However, specialist programming knowledge is required to use BioASP and no methods exist to integrate both of these software platforms effectively.
Item Description:Gesehen am 03.07.2020
Physical Description:Online Resource
ISSN:1752-0509
DOI:10.1186/s12918-015-0179-6

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