Buchumschlag

RNA modification mapping with JACUSA2

Several high-throughput antibody-free methods for RNA modification detection from sequencing data have been developed. We present JACUSA2 as a versatile software solution and comprehensive analysis framework for RNA modification detection assays that are based on either the Illumina or Nanopore plat...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Piechotta, Michael (VerfasserIn) , Naarmann-de Vries, Isabel S. (VerfasserIn) , Wang, Qi (VerfasserIn) , Altmüller, Janine (VerfasserIn) , Dieterich, Christoph (VerfasserIn)
Dokumenttyp: Article (Journal)
Sprache:Englisch
Veröffentlicht: 16 May 2022
In: Genome biology
Year: 2022, Jahrgang: 23, Pages: 1-11
ISSN:1474-760X
DOI:10.1186/s13059-022-02676-0
Online-Zugang:Verlag, kostenfrei, Volltext: https://doi.org/10.1186/s13059-022-02676-0
Volltext
Verfasserangaben:Michael Piechotta, Isabel S. Naarmann-de Vries, Qi Wang, Janine Altmüller and Christoph Dieterich

MARC

LEADER 00000caa a2200000 c 4500
001 1807739422
003 DE-627
005 20240112114105.0
007 cr uuu---uuuuu
008 220624s2022 xx |||||o 00| ||eng c
024 7 |a 10.1186/s13059-022-02676-0  |2 doi 
035 |a (DE-627)1807739422 
035 |a (DE-599)KXP1807739422 
035 |a (OCoLC)1341461679 
040 |a DE-627  |b ger  |c DE-627  |e rda 
041 |a eng 
084 |a 33  |2 sdnb 
100 1 |a Piechotta, Michael  |e VerfasserIn  |0 (DE-588)1123598509  |0 (DE-627)877017565  |0 (DE-576)481839178  |4 aut 
245 1 0 |a RNA modification mapping with JACUSA2  |c Michael Piechotta, Isabel S. Naarmann-de Vries, Qi Wang, Janine Altmüller and Christoph Dieterich 
264 1 |c 16 May 2022 
300 |a 11 
336 |a Text  |b txt  |2 rdacontent 
337 |a Computermedien  |b c  |2 rdamedia 
338 |a Online-Ressource  |b cr  |2 rdacarrier 
500 |a Gesehen am 24.06.2022 
520 |a Several high-throughput antibody-free methods for RNA modification detection from sequencing data have been developed. We present JACUSA2 as a versatile software solution and comprehensive analysis framework for RNA modification detection assays that are based on either the Illumina or Nanopore platform. Importantly, JACUSA2 can integrate information from multiple experiments, such as replicates and different conditions, and different library types, such as first- or second-strand cDNA libraries. We demonstrate its utility, showing analysis workflows for N6-methyladenosine (m6A) and pseudouridine (Ψ) detection on Illumina and Nanopore sequencing data sets. Our software and its R helper package are available as open source solutions. 
650 4 |a m6A 
650 4 |a Nanopore 
650 4 |a Pseudouridine 
650 4 |a Reverse transcription signature 
700 1 |a Naarmann-de Vries, Isabel S.  |e VerfasserIn  |0 (DE-588)1201521998  |0 (DE-627)1685418813  |4 aut 
700 1 |a Wang, Qi  |d 1982-  |e VerfasserIn  |0 (DE-588)1173714332  |0 (DE-627)1043563466  |0 (DE-576)515623725  |4 aut 
700 1 |a Altmüller, Janine  |e VerfasserIn  |4 aut 
700 1 |a Dieterich, Christoph  |d 1975-  |e VerfasserIn  |0 (DE-588)130054844  |0 (DE-627)494359269  |0 (DE-576)297972448  |4 aut 
773 0 8 |i Enthalten in  |t Genome biology  |d London : BioMed Central, 2000  |g 23(2022), Artikel-ID 115, Seite 1-11  |h Online-Ressource  |w (DE-627)326173617  |w (DE-600)2040529-7  |w (DE-576)110736192  |x 1474-760X  |7 nnas  |a RNA modification mapping with JACUSA2 
773 1 8 |g volume:23  |g year:2022  |g elocationid:115  |g pages:1-11  |g extent:11  |a RNA modification mapping with JACUSA2 
856 4 0 |u https://doi.org/10.1186/s13059-022-02676-0  |x Verlag  |x Resolving-System  |z kostenfrei  |3 Volltext 
951 |a AR 
992 |a 20220624 
993 |a Article 
994 |a 2022 
998 |g 130054844  |a Dieterich, Christoph  |m 130054844:Dieterich, Christoph  |d 910000  |d 910100  |e 910000PD130054844  |e 910100PD130054844  |k 0/910000/  |k 1/910000/910100/  |p 5  |y j 
998 |g 1173714332  |a Wang, Qi  |m 1173714332:Wang, Qi  |p 3 
998 |g 1201521998  |a Naarmann-de Vries, Isabel S.  |m 1201521998:Naarmann-de Vries, Isabel S.  |d 910000  |d 910100  |e 910000PN1201521998  |e 910100PN1201521998  |k 0/910000/  |k 1/910000/910100/  |p 2 
998 |g 1123598509  |a Piechotta, Michael  |m 1123598509:Piechotta, Michael  |d 910000  |d 910100  |e 910000PP1123598509  |e 910100PP1123598509  |k 0/910000/  |k 1/910000/910100/  |p 1  |x j 
999 |a KXP-PPN1807739422  |e 4156181561 
BIB |a Y 
SER |a journal 
JSO |a {"language":["eng"],"person":[{"display":"Piechotta, Michael","family":"Piechotta","given":"Michael","role":"aut"},{"given":"Isabel S.","role":"aut","family":"Naarmann-de Vries","display":"Naarmann-de Vries, Isabel S."},{"display":"Wang, Qi","family":"Wang","role":"aut","given":"Qi"},{"family":"Altmüller","display":"Altmüller, Janine","given":"Janine","role":"aut"},{"given":"Christoph","role":"aut","family":"Dieterich","display":"Dieterich, Christoph"}],"name":{"displayForm":["Michael Piechotta, Isabel S. Naarmann-de Vries, Qi Wang, Janine Altmüller and Christoph Dieterich"]},"physDesc":[{"extent":"11 S."}],"relHost":[{"id":{"issn":["1474-760X"],"zdb":["2040529-7"],"eki":["326173617"]},"physDesc":[{"extent":"Online-Ressource"}],"recId":"326173617","type":{"media":"Online-Ressource","bibl":"periodical"},"disp":"RNA modification mapping with JACUSA2Genome biology","title":[{"title":"Genome biology","title_sort":"Genome biology","subtitle":"biology for the post-genomic era"}],"origin":[{"dateIssuedKey":"2000","publisher":"BioMed Central","dateIssuedDisp":"2000-","publisherPlace":"London"}],"pubHistory":["1.2000 -"],"note":["ISSN-Portal 1465-6914: GenomeBiology.com","Gesehen am 11.02.15"],"part":{"pages":"1-11","year":"2022","volume":"23","extent":"11","text":"23(2022), Artikel-ID 115, Seite 1-11"},"language":["eng"]}],"recId":"1807739422","id":{"eki":["1807739422"],"doi":["10.1186/s13059-022-02676-0"]},"note":["Gesehen am 24.06.2022"],"origin":[{"dateIssuedDisp":"16 May 2022","dateIssuedKey":"2022"}],"title":[{"title_sort":"RNA modification mapping with JACUSA2","title":"RNA modification mapping with JACUSA2"}],"type":{"media":"Online-Ressource","bibl":"article-journal"}} 
SRT |a PIECHOTTAMRNAMODIFIC1620 

Ähnliche Einträge