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Impact and characterization of serial structural variations across humans and great apes

Modern sequencing technology enables the systematic detection of complex structural variation (SV) across genomes. However, extensive DNA rearrangements arising through a series of mutations, a phenomenon we refer to as serial SV (sSV), remain underexplored, posing a challenge for SV discovery. Here...

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Hauptverfasser: Höps, Wolfram (VerfasserIn) , Rausch, Tobias (VerfasserIn) , Jendrusch, Michael (VerfasserIn) , Korbel, Jan Oliver (VerfasserIn) , Sedlazeck, Fritz (VerfasserIn)
Dokumenttyp: Article (Journal)
Sprache:Englisch
Veröffentlicht: 2024
In: Nature Communications
Year: 2024, Jahrgang: 15, Pages: 1-15
ISSN:2041-1723
DOI:10.1038/s41467-024-52027-9
Online-Zugang:Verlag, kostenfrei, Volltext: https://doi.org/10.1038/s41467-024-52027-9
Verlag, kostenfrei, Volltext: https://www.nature.com/articles/s41467-024-52027-9
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Verfasserangaben:Wolfram Höps, Tobias Rausch, Michael Jendrusch, Human Genome Structural Variation Consortium (HGSVC)Jan O. Korbel & Fritz J. Sedlazeck
Beschreibung
Zusammenfassung:Modern sequencing technology enables the systematic detection of complex structural variation (SV) across genomes. However, extensive DNA rearrangements arising through a series of mutations, a phenomenon we refer to as serial SV (sSV), remain underexplored, posing a challenge for SV discovery. Here, we present NAHRwhals (https://github.com/WHops/NAHRwhals), a method to infer repeat-mediated series of SVs in long-read genomic assemblies. Applying NAHRwhals to haplotype-resolved human genomes from 28 individuals reveals 37 sSV loci of various length and complexity. These sSVs explain otherwise cryptic variation in medically relevant regions such as the TPSAB1 gene, 8p23.1, 22q11 and Sotos syndrome regions. Comparisons with great ape assemblies indicate that most human sSVs formed recently, after the human-ape split, and involved non-repeat-mediated processes in addition to non-allelic homologous recombination. NAHRwhals reliably discovers and characterizes sSVs at scale and independent of species, uncovering their genomic abundance and suggesting broader implications for disease.
Beschreibung:Online veröffentlicht: 13. September 2024
Gesehen am 19.10.2025
Beschreibung:Online Resource
ISSN:2041-1723
DOI:10.1038/s41467-024-52027-9

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